Sfoglia per Autore
Probabilistic Latent Semantic Analysis for prediction of Gene Ontology annotations
2012-01-01 Masseroli, Marco; Chicco, Davide; Pinoli, Pietro
Improved biomolecular annotation prediction through weighting scheme methods
2013-01-01 Pinoli, Pietro; Chicco, Davide; Masseroli, Marco
Latent Semantic Analysis to predict novel Gene Ontology annotations
2013-01-01 Pinoli, Pietro; Masseroli, Marco
Enhanced probabilistic latent semantic analysis with weighting schemes to predict genomic annotations
2013-01-01 Pinoli, Pietro; Chicco, Davide; Masseroli, Marco
Discovering new gene functionalities from random perturbations of known gene ontological annotations
2014-01-01 Domeniconi, G; Masseroli, Marco; Moro, G; Pinoli, Pietro
Weighting scheme methods for enhanced genomic annotation prediction
2014-01-01 Pinoli, Pietro; Chicco, Davide; Masseroli, Marco
Latent Dirichlet Allocation based on Gibbs Sampling for gene function prediction
2014-01-01 Pinoli, Pietro; Chicco, Davide; Masseroli, Marco
GenoMetric Query Language applications to the integrative evaluation of heterogeneous genomic data
2015-01-01 Palluzzi, Fernando; Masseroli, Marco; Pinoli, Pietro; Venco, Francesco; Kaitoua, Abdulrahman; Jalili, Vahid; Muller, H; Ceri, Stefano
GMQL Services - generic, easy-to-use infrastructure for genomic data retrieval and processing
2015-01-01 Vaskin, Yuriy; Masseroli, Marco; Pinoli, Pietro; Venco, Francesco; Kaitoua, Abdulrahman; Jalili, Vahid; Palluzzi, Fernando; Muller, H; Ceri, Stefano
GenoMetric Query Language: A novel approach to large-scale genomic data management
2015-01-01 Masseroli, Marco; Pinoli, Pietro; Venco, Francesco; Kaitoua, Abdulrahman; Jalili, Vahid; Palluzzi, Fernando; Muller, H; Ceri, Stefano
Evaluating cloud frameworks on genomic applications
2015-01-01 Bertoni, Michele; Ceri, Stefano; Kaitoua, Abdulrahman; Pinoli, Pietro
Random perturbations of term weighted Gene Ontology annotations for discovering gene unknown functionalities
2015-01-01 Domeniconi, G; Masseroli, Marco; Moro, G; Pinoli, Pietro
Computational algorithms to predict Gene Ontology annotations
2015-01-01 Pinoli, Pietro; Chicco, Davide; Masseroli, Marco
Modeling and interoperability of heterogeneous genomic big data for integrative processing and querying
2016-01-01 Masseroli, Marco; Kaitoua, Abdulrahman; Pinoli, Pietro; Ceri, Stefano
Cross-organism learning method to discover new gene functionalities
2016-01-01 Domeniconi, Giacomo; Masseroli, Marco; Moro, Gianluca; Pinoli, Pietro
Next generation genomic computing
2016-01-01 Ceri, Stefano; Kaitoua, Abdulrahman; Pinoli, Pietro; Canakoglu, Arif; Masseroli, Marco
Next generation genomic computing
2016-01-01 Ceri, Stefano; Kaitoua, Abdulrahman; Pinoli, Pietro; Canakoglu, Arif; Masseroli, Marco
Data management for next generation genomic computing
2016-01-01 Ceri, Stefano; Kaitoua, Abdulrahman; Masseroli, Marco; Pinoli, Pietro; Venco, Francesco
Cloud-based management and genome-wide processing of numerous and heterogeneous genomic feature datasets through GMQL (publicly available on CINECA cloud).
2016-01-01 Kaitoua, Abdulrahman; Canakoglu, Arif; Pinoli, Pietro; Ceri, Stefano; Masseroli, Marco
Genomic data modeling for interoperability and next generation genomic data management
2016-01-01 Ceri, Stefano; Kaitoua, Abdulrahman; Pinoli, Pietro; Masseroli, Marco
Data-driven genomic computing: making sense of signals from the genome
2017-01-01 Ceri, S; Canakoglu, A; Kaitoua, A; Masseroli, M; Pinoli, P.
Framework for Supporting Genomic Operations
2017-01-01 Kaitoua, Abdulrahman; Pinoli, Pietro; Bertoni, Michele; Ceri, Stefano
Data management for heterogeneous genomic datasets
2017-01-01 Ceri, Stefano; Kaitoua, Abdulrahman; Masseroli, Marco; Pinoli, Pietro; Venco, Francesco
Scalable genomic data management system on the cloud
2017-01-01 Kaitoua, Abdulrahman; Gulino, Andrea; Masseroli, Marco; Pinoli, Pietro; Ceri, Stefano
Evaluating genomic big data operations on SciDB and spark
2017-01-01 Cattani, Simone; Ceri, Stefano; Kaitoua, Abdulrahman; Pinoli, Pietro
Bi-Dimensional Binning for Big Genomic Datasets
2017-01-01 Cattani, Simone; Ceri, Stefano; Kaitoua, Abdulrahman; Pinoli, Pietro
Implementing a transcription factor interaction prediction system using the genometric query language
2018-01-01 Perna, Stefano; Canakoglu, Arif; Pinoli, Pietro; Ceri, Stefano; Wong, Limsoon
TICA: Transcriptional Interaction and Coregulation Analyzer
2018-01-01 Perna, Stefano; Pinoli, Pietro; Ceri, Stefano; Wong, Limsoon
DLA: a Distributed, Location-based and Apriori-based Algorithm for Biological Sequence Pattern Mining
2018-01-01 Stamoulakatou, E; Gulino, A; Pinoli, P
Exploring genomic datasets: From batch to interactive and back
2018-01-01 Nanni, L.; Pinoli, P.; Canakoglu, A.; Ceri, S.
Demonstration of GenoMetric Query Language
2018-01-01 Ceri, Stefano; Canakoglu, Arif; Gulino, Andrea; Kaitoua, Abdulrahman; Masseroli, Marco; Nanni, Luca; Pinoli, Pietro
Overview of GeCo: A Project for Exploring and Integrating Signals from the Genome
2018-01-01 Ceri, Stefano; Bernasconi, Anna; Canakoglu, Arif; Gulino, Andrea; Kaitoua, Abdulrahman; Masseroli, Marco; Nanni, Luca; Pinoli, Pietro
Experiences in the development of a data management system for genomics
2018-01-01 Ceri, Stefano; Canakoglu, Arif; Kaitoua, Abdulrahman; Masseroli, Marco; Pinoli, Pietro
Comparing classic, deep and semi-supervised learning for whole-transcriptome breast cancer subtyping
2019-01-01 Cristovao, F; Canakoglu, A; Carman, M; Cascianelli, S; Nanni, L; Pinoli, P; Masseroli, M
Drug Repositioning Predictions by Non-Negative Matrix Tri-Factorization of Integrated Association Data
2019-01-01 Dissez, Gaëtan; Ceddia, Gaia; Pinoli, Pietro; Ceri, Stefano; Masseroli, Marco
Metadata management for scientific databases
2019-01-01 Pinoli, Pietro; Ceri, Stefano; Martinenghi, Davide; Nanni, Luca
Processing of big heterogeneous genomic datasets for tertiary analysis of Next Generation Sequencing data
2019-01-01 Masseroli, Marco; Canakoglu, Arif; Pinoli, Pietro; Kaitoua, Abdulrahman; Gulino, Andrea; Horlova, Olha; Nanni, Luca; Bernasconi, Anna; Perna, Stefano; Stamoulakatou, Eirini; Ceri, Stefano
Deleterious impact of mutational processes on transcription factor binding sites in human cancer
2019-01-01 Pinoli, P.; Stamoulakatou, E.; Ceri, S.; Piro, R. M.
Analysis and Visualization of Mutation Enrichments for Selected Genomic Regions and Cancer Types
2019-01-01 Gulino, A; Stamoulakatou, E; Canakoglu, A; Pinoli, P
Network-based approach to identify new indications for existing drugs in the DrugBank database
2019-01-01 Ceddia, G; Pinoli, P; Masseroli, M
Genomic big data management, modeling and computing
2019-01-01 Masseroli, M; Pinoli, P; Canakoglu, A; Bernasconi, A; Gulino, A; Nanni, L; Orlova, O; Pallotta, S; Ceri, S
Non-negative Matrix Tri-Factorization for Data Integration and Network-based Drug Repositioning
2019-01-01 Ceddia, Gaia; Pinoli, Pietro; Ceri, Stefano; Masseroli, Marco
PyGMQL: scalable data extraction and analysis for heterogeneous genomic datasets
2019-01-01 Nanni, L.; Pinoli, P.; Canakoglu, A.; Ceri, S.
Impact of mutational signatures on microRNA and their response elements
2020-01-01 Stamoulakatou, Eirini; Pinoli, Pietro; Ceri, Stefano; Piro, Rosario M
NAUTICA: classifying transcription factor interactions by positional and protein-protein interaction information
2020-01-01 Perna, Stefano; Pinoli, Pietro; Ceri, Stefano; Wong, Limsoon
Pan-cancer analysis of somatic mutations and epigenetic alterations in insulated neighbourhood boundaries
2020-01-01 Pinoli, Pietro; Stamoulakatou, Eirini; Nguyen, An-Phi; Rodríguez Martínez, María; Ceri, Stefano
Empowering Virus Sequence Research Through Conceptual Modeling
2020-01-01 Bernasconi, Anna; Canakoglu, Arif; Pinoli, Pietro; Ceri, Stefano
Evaluating Deep Semi-supervised Learning for Whole-Transcriptome Breast Cancer Subtyping
2020-01-01 Cascianelli, Silvia; Cristovao, Francisco; Canakoglu, Arif; Carman, Mark; Nanni, Luca; Pinoli, Pietro; Masseroli, Marco
OK, DNA! A Conversational Interface to Explore Genomic Data
2020-01-01 Crovari, Pietro; Catania, Fabio; Pinoli, Pietro; Roytburg, Philipp; Salzar, Asier; Garzotto, Franca; Ceri, Stefano
Data Science for Genomic Data Management: Challenges, Resources, Experiences
2020-01-01 Ceri, Stefano; Pinoli, Pietro
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