GADIOLI, DAVIDE
GADIOLI, DAVIDE
DIPARTIMENTO DI ELETTRONICA, INFORMAZIONE E BIOINGEGNERIA
A Review on Parallel Virtual Screening Softwares for High-Performance Computers
2022-01-01 Murugan, Natarajan Arul; Podobas, Artur; Gadioli, Davide; Vitali, Emanuele; Palermo, Gianluca; Markidis, Stefano
Addressing docking pose selection with structure-based deep learning: Recent advances, challenges and opportunities
2024-01-01 Vittorio, Serena; Lunghini, Filippo; Morerio, Pietro; Gadioli, Davide; Orlandini, Sergio; Silva, Paulo; Jan Martinovic, Null; Pedretti, Alessandro; Bonanni, Domenico; Del Bue, Alessio; Palermo, Gianluca; Vistoli, Giulio; Beccari, Andrea R.
An Efficient Monte Carlo-based Probabilistic Time-Dependent Routing Calculation Targeting a Server-Side Car Navigation System
2019-01-01 Vitali, E.; Gadioli, D.; Palermo, G.; Golasowski, M.; Bispo, J.; Pinto, P.; Martinovic, J.; Slaninova, K.; Cardoso, J.; Silvano, C.
CONTREX: Design of embedded mixed-criticality CONTRol systems under consideration of EXtra-functional properties
2017-01-01 Grüttner, Kim; Görgen, Ralph; Schreiner, Sören; Herrera, Fernando; Peñil, Pablo; Medina, Julio; Villar, Eugenio; Palermo, Gianluca; Fornaciari, William; Brandolese, Carlo; Gadioli, Davide; Vitali, Emanuele; Zoni, Davide; Bocchio, Sara; Ceva, Luca; Azzoni, Paolo; Poncino, Massimo; Vinco, Sara; Macii, Enrico; Cusenza, Salvatore; Favaro, John; Valencia, Raúl; Sander, Ingo; Rosvall, Kathrin; Khalilzad, Nima; Quaglia, Davide
Enabling performance portability on the LiGen drug discovery pipeline
2024-01-01 Crisci, Luigi; Carpentieri, Lorenzo; Cosenza, Biagio; Accordi, Gianmarco; Gadioli, Davide; Vitali, Emanuele; Palermo, Gianluca; Beccari, Andrea Rosario
Exploiting OpenMP and OpenACC to accelerate a geometric approach to molecular docking in heterogeneous HPC nodes
2019-01-01 Vitali, E.; Gadioli, D.; Palermo, G.; Beccari, A.; Cavazzoni, C.; Silvano, C.
EXSCALATE: An Extreme-Scale Virtual Screening Platform for Drug Discovery Targeting Polypharmacology to Fight SARS-CoV-2
2023-01-01 Gadioli, D.; Vitali, E.; Ficarelli, F.; Latini, C.; Manelfi, C.; Talarico, C.; Silvano, C.; Cavazzoni, C.; Palermo, G.; Beccari, A. R.
GPU-optimized approaches to molecular docking-based virtual screening in drug discovery: A comparative analysis
2024-01-01 Vitali, Emanuele; Ficarelli, Federico; Bisson, Mauro; Gadioli, Davide; Accordi, Gianmarco; Fatica, Massimiliano; Beccari, Andrea R.; Palermo, Gianluca
Legio: fault resiliency for embarrassingly parallel MPI applications
2021-01-01 Rocco, Roberto; Gadioli, Davide; Palermo, Gianluca
mARGOt: a Dynamic Autotuning Framework for Self-aware Approximate Computing
2019-01-01 Gadioli, Davide; Vitali, Emanuele; Palermo, Gianluca; Silvano, Cristina
MEDIATE - Molecular DockIng at homE: Turning collaborative simulations into therapeutic solutions
2023-01-01 Vistoli, Giulio; Manelfi, Candida; Talarico, Carmine; Fava, Anna; Warshel, Arieh; Tetko, Igor V; Apostolov, Rossen; Ye, Yang; Latini, Chiara; Ficarelli, Federico; Palermo, Gianluca; Gadioli, Davide; Vitali, Emanuele; Varriale, Gaetano; Pisapia, Vincenzo; Scaturro, Marco; Coletti, Silvano; Gregori, Daniele; Gruffat, Daniel; Leija, Edgardo; Hessenauer, Sam; Delbianco, Alberto; Allegretti, Marcello; Beccari, Andrea R
Out of kernel tuning and optimizations for portable large-scale docking experiments on GPUs
2024-01-01 Accordi, Gianmarco; Gadioli, Davide; Vitali, Emanuele; Crisci, Luigi; Cosenza, Biagio; Beccari, Andrea; Palermo, Gianluca
Pegasus: Performance Engineering for Software Applications Targeting HPC Systems
2020-01-01 Pinto, P.; Bispo, J.; Cardoso, J.; Barbosa, J. G.; Gadioli, D.; Palermo, G.; Martinovic, J.; Golasowski, M.; Slaninova, K.; Cmar, R.; Silvano, C.
The ANTAREX domain specific language for high performance computing
2019-01-01 Silvano, C.; Agosta, G.; Bartolini, A.; Beccari, A. R.; Benini, L.; Besnard, L.; Bispo, J.; Cmar, R.; Cardoso, J. M. P.; Cavazzoni, C.; Cesarini, D.; Cherubin, S.; Ficarelli, F.; Gadioli, D.; Golasowski, M.; Libri, A.; Martinovic, J.; Palermo, G.; Pinto, P.; Rohou, E.; Slaninova, K.; Vitali, E.
Tunable approximations to control time-to-solution in an HPC molecular docking Mini-App
2021-01-01 Gadioli, D.; Palermo, G.; Cherubin, S.; Vitali, E.; Agosta, G.; Manelfi, C.; Beccari, A. R.; Cavazzoni, C.; Sanna, N.; Silvano, C.