NANNI, LUCA
NANNI, LUCA
DIPARTIMENTO DI ELETTRONICA, INFORMAZIONE E BIOINGEGNERIA
Comparing classic, deep and semi-supervised learning for whole-transcriptome breast cancer subtyping
2019-01-01 Cristovao, F; Canakoglu, A; Carman, M; Cascianelli, S; Nanni, L; Pinoli, P; Masseroli, M
Demonstration of GenoMetric Query Language
2018-01-01 Ceri, Stefano; Canakoglu, Arif; Gulino, Andrea; Kaitoua, Abdulrahman; Masseroli, Marco; Nanni, Luca; Pinoli, Pietro
Designing and Evaluating Deep Learning Models for Cancer Detection on Gene Expression Data
2020-01-01 Canakoglu, Arif; Nanni, Luca; Sokolovsky, Artur; Ceri, Stefano
Evaluating Deep Semi-supervised Learning for Whole-Transcriptome Breast Cancer Subtyping
2020-01-01 Cascianelli, Silvia; Cristovao, Francisco; Canakoglu, Arif; Carman, Mark; Nanni, Luca; Pinoli, Pietro; Masseroli, Marco
Exploring chromatin conformation and gene co-expression through graph embedding
2020-01-01 Varrone, M.; Nanni, L.; Ciriello, G.; Ceri, S.
Exploring genomic datasets: From batch to interactive and back
2018-01-01 Nanni, L.; Pinoli, P.; Canakoglu, A.; Ceri, S.
Extensive epigenomic integration of the glucocorticoid response in primary human monocytes and in vitro derived macrophages
2019-01-01 Wang, Cheng; Nanni, Luca; Novakovic, Boris; Megchelenbrink, Wout; Kuznetsova, Tatyana; Stunnenberg, Hendrik G; Ceri, Stefano; Logie, Colin
Federated sharing and processing of genomic datasets for tertiary data analysis
2021-01-01 Canakoglu, A.; Pinoli, P.; Gulino, A.; Nanni, L.; Masseroli, M.; Ceri, S.
Genomic big data management, modeling and computing
2019-01-01 Masseroli, M; Pinoli, P; Canakoglu, A; Bernasconi, A; Gulino, A; Nanni, L; Orlova, O; Pallotta, S; Ceri, S
Investigating Deep Learning based Breast Cancer Subtyping using Pan-cancer and Multi-omic Data
2022-01-01 Cristovao, F.; Cascianelli, S.; Canakoglu, A.; Carman, M.; Nanni, L.; Pinoli, P.; Masseroli, M.
Metadata management for scientific databases
2019-01-01 Pinoli, Pietro; Ceri, Stefano; Martinenghi, Davide; Nanni, Luca
Overview of GeCo: A Project for Exploring and Integrating Signals from the Genome
2018-01-01 Ceri, Stefano; Bernasconi, Anna; Canakoglu, Arif; Gulino, Andrea; Kaitoua, Abdulrahman; Masseroli, Marco; Nanni, Luca; Pinoli, Pietro
Processing of big heterogeneous genomic datasets for tertiary analysis of Next Generation Sequencing data
2019-01-01 Masseroli, Marco; Canakoglu, Arif; Pinoli, Pietro; Kaitoua, Abdulrahman; Gulino, Andrea; Horlova, Olha; Nanni, Luca; Bernasconi, Anna; Perna, Stefano; Stamoulakatou, Eirini; Ceri, Stefano
PyGMQL: scalable data extraction and analysis for heterogeneous genomic datasets
2019-01-01 Nanni, L.; Pinoli, P.; Canakoglu, A.; Ceri, S.
Spatial patterns of CTCF sites define the anatomy of TADs and their boundaries
2020-01-01 Nanni, Luca; Ceri, Stefano; Logie, Colin
Systematic inference and comparison of multi-scale chromatin sub-compartments connects spatial organization to cell phenotypes
2021-01-01 Liu, Yuanlong; Nanni, Luca; Sungalee, Stephanie; Zufferey, Marie; Tavernari, Daniele; Mina, Marco; Ceri, Stefano; Oricchio, Elisa; Ciriello, Giovanni
The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles
2023-01-01 Schreiber, J.; Boix, C.; Wooklee, J.; Li, H.; Guan, Y.; Chang, C. -C.; Chang, J. -C.; Hawkins-Hooker, A.; Scholkopf, B.; Schweikert, G.; Carulla, M. R.; Canakoglu, A.; Guzzo, F.; Nanni, L.; Masseroli, M.; Carman, M. J.; Pinoli, P.; Hong, C.; Yip, K. Y.; Spence, J. P.; Batra, S. S.; Song, Y. S.; Mahony, S.; Zhang, Z.; Tan, W.; Shen, Y.; Sun, Y.; Shi, M.; Adrian, J.; Sandstrom, R.; Farrell, N.; Halow, J.; Lee, K.; Jiang, L.; Yang, X.; Epstein, C.; Strattan, J. S.; Bernstein, B.; Snyder, M.; Kellis, M.; Stafford, W.; Kundaje, A.