CANAKOGLU, ARIF
CANAKOGLU, ARIF
DIPARTIMENTO DI ELETTRONICA, INFORMAZIONE E BIOINGEGNERIA
A review on viral data sources and search systems for perspective mitigation of COVID-19
2021-01-01 Bernasconi, Anna; Canakoglu, Arif; Masseroli, Marco; Pinoli, Pietro; Ceri, Stefano
Detection of gene annotations and protein-protein interaction associated disorders through transitive relationships between integrated annotations
2015-01-01 Masseroli, Marco; Canakoglu, Arif; Quigliatti, M.
EpiSurf: Metadata-driven search server for analyzing amino acid changes within epitopes of SARS-CoV-2 and other viral species
2021-01-01 Bernasconi, A.; Cilibrasi, L.; Al Khalaf, R.; Alfonsi, T.; Ceri, S.; Pinoli, P.; Canakoglu, A.
Federated sharing and processing of genomic datasets for tertiary data analysis
2021-01-01 Canakoglu, A.; Pinoli, P.; Gulino, A.; Nanni, L.; Masseroli, M.; Ceri, S.
GeCoAgent: A Conversational Agent for Empowering Genomic Data Extraction and Analysis
2022-01-01 Crovari, Pietro; Pidò, Sara; Pinoli, Pietro; Bernasconi, Anna; Canakoglu, Arif; Garzotto, Franca; Ceri, Stefano
Genomic data integration and user-defined sample-set extraction for population variant analysis
2022-01-01 Alfonsi, Tommaso; Bernasconi, Anna; Canakoglu, Arif; Masseroli, Marco
GenoSurf: metadata driven semantic search system for integrated genomic datasets
2019-01-01 Canakoglu, Arif; Bernasconi, Anna; Colombo, Andrea; Masseroli, Marco; Ceri, Stefano
High Performance Integration Pipeline for Viral and Epitope Sequences
2022-01-01 Alfonsi, Tommaso; Pinoli, Pietro; Canakoglu, Arif
Integration and querying of genomic and proteomic semantic annotations for biomedical knowledge extraction
2016-01-01 Masseroli, Marco; Canakoglu, Arif; Ceri, Stefano
Investigating Deep Learning based Breast Cancer Subtyping using Pan-cancer and Multi-omic Data
2022-01-01 Cristovao, F.; Cascianelli, S.; Canakoglu, A.; Carman, M.; Nanni, L.; Pinoli, P.; Masseroli, M.
META-BASE: a Novel Architecture for Large-Scale Genomic Metadata Integration
2022-01-01 Bernasconi, Anna; Canakoglu, Arif; Masseroli, Marco; Ceri, Stefano
OpenGDC: Unifying, Modeling, Integrating Cancer Genomic Data and Clinical Metadata
2020-01-01 Cappelli, Eleonora; Cumbo, Fabio; Bernasconi, Anna; Canakoglu, Arif; Ceri, Stefano; Masseroli, Marco; Weitschek, Emanuel
Processing genome-wide association studies within a repository of heterogeneous genomic datasets
2023-01-01 Bernasconi, Anna; Canakoglu, Arif; Comolli, Federico
Processing of big heterogeneous genomic datasets for tertiary analysis of Next Generation Sequencing data
2019-01-01 Masseroli, Marco; Canakoglu, Arif; Pinoli, Pietro; Kaitoua, Abdulrahman; Gulino, Andrea; Horlova, Olha; Nanni, Luca; Bernasconi, Anna; Perna, Stefano; Stamoulakatou, Eirini; Ceri, Stefano
PyGMQL: scalable data extraction and analysis for heterogeneous genomic datasets
2019-01-01 Nanni, L.; Pinoli, P.; Canakoglu, A.; Ceri, S.
The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles
2023-01-01 Schreiber, J.; Boix, C.; Wooklee, J.; Li, H.; Guan, Y.; Chang, C. -C.; Chang, J. -C.; Hawkins-Hooker, A.; Scholkopf, B.; Schweikert, G.; Carulla, M. R.; Canakoglu, A.; Guzzo, F.; Nanni, L.; Masseroli, M.; Carman, M. J.; Pinoli, P.; Hong, C.; Yip, K. Y.; Spence, J. P.; Batra, S. S.; Song, Y. S.; Mahony, S.; Zhang, Z.; Tan, W.; Shen, Y.; Sun, Y.; Shi, M.; Adrian, J.; Sandstrom, R.; Farrell, N.; Halow, J.; Lee, K.; Jiang, L.; Yang, X.; Epstein, C.; Strattan, J. S.; Bernstein, B.; Snyder, M.; Kellis, M.; Stafford, W.; Kundaje, A.
The road towards data integration in human genomics: players, steps and interactions
2021-01-01 Bernasconi, Anna; Canakoglu, Arif; Masseroli, Marco; Ceri, Stefano
VariantHunter: a method and tool for fast detection of emerging SARS-CoV-2 variants
2023-01-01 Pinoli, Pietro; Canakoglu, Arif; Ceri, Stefano; Chiara, Matteo; Ferrandi, Erika; Minotti, Luca; Bernasconi, Anna
ViruClust: Direct comparison of SARS-CoV-2 genomes and genetic variants in space and time
2022-01-01 Cilibrasi, L.; Pinoli, P.; Bernasconi, A.; Canakoglu, A.; Chiara, M.; Ceri, S.
ViruSurf: an integrated database to investigate viral sequences
2021-01-01 Canakoglu, Arif; Pinoli, Pietro; Bernasconi, Anna; Alfonsi, Tommaso; Melidis, Damianos; Ceri, Stefano