The disclosed embodiments concern methods, apparatus, systems and computer program products for computing the best alignment score between a query sequence and a non-acyclic sequence-labelled reference genome graph comprising a processor and non-transitory memory. In an embodiment, said computing is performed employing an alignment algorithm suitable for non-acyclic graph executed on a heterogeneous computing system, containing at least a CPU (Central Processing Unit) and a GPU (Graphics Processing Units).
Method for the alignment of sequence reads to cyclic genome graphs on heterogeneous computing systems
G. W. Di Donato;A. Zeni;M. Coggi;G. Bruno;M. D. Santambrogio
2022-01-01
Abstract
The disclosed embodiments concern methods, apparatus, systems and computer program products for computing the best alignment score between a query sequence and a non-acyclic sequence-labelled reference genome graph comprising a processor and non-transitory memory. In an embodiment, said computing is performed employing an alignment algorithm suitable for non-acyclic graph executed on a heterogeneous computing system, containing at least a CPU (Central Processing Unit) and a GPU (Graphics Processing Units).File in questo prodotto:
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