Genomics is opening many interesting practical and theoretical computational problems; one of them is the search for a collection of genomic regions at given distances from each other, i.e., a pattern of genomic regions. We designed and implemented an optimized pattern-search algorithm able to find efficiently, within a large set of genomic data, genomic region sequences which are similar to a given pattern and present its applicability to the problem of enhancer detection.

Looking for similar patterns in genomic sequences

CERI, STEFANO;MASSEROLI, MARCO
2016-01-01

Abstract

Genomics is opening many interesting practical and theoretical computational problems; one of them is the search for a collection of genomic regions at given distances from each other, i.e., a pattern of genomic regions. We designed and implemented an optimized pattern-search algorithm able to find efficiently, within a large set of genomic data, genomic region sequences which are similar to a given pattern and present its applicability to the problem of enhancer detection.
2016
Proceedings of the 24th Italian Symposium on Advanced Database Systems, Sistemi Evoluti per Basi di Dati (SEBD) 2016
9788896354889
Information Systems; Software
INF; bioinformatics
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/11311/1013763
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