Genomics is opening many interesting practical and theoretical computational problems; one of them is the search for a collection of genomic regions at given distances from each other, i.e., a pattern of genomic regions. We designed and implemented an optimized pattern-search algorithm able to find efficiently, within a large set of genomic data, genomic region sequences which are similar to a given pattern and present its applicability to the problem of enhancer detection.
Looking for similar patterns in genomic sequences
CERI, STEFANO;MASSEROLI, MARCO
2016-01-01
Abstract
Genomics is opening many interesting practical and theoretical computational problems; one of them is the search for a collection of genomic regions at given distances from each other, i.e., a pattern of genomic regions. We designed and implemented an optimized pattern-search algorithm able to find efficiently, within a large set of genomic data, genomic region sequences which are similar to a given pattern and present its applicability to the problem of enhancer detection.File in questo prodotto:
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