Sfoglia per Autore
Out of kernel tuning and optimizations for portable large-scale docking experiments on GPUs
2024-01-01 Accordi, Gianmarco; Gadioli, Davide; Vitali, Emanuele; Crisci, Luigi; Cosenza, Biagio; Beccari, Andrea; Palermo, Gianluca
GPU-optimized approaches to molecular docking-based virtual screening in drug discovery: A comparative analysis
2024-01-01 Vitali, Emanuele; Ficarelli, Federico; Bisson, Mauro; Gadioli, Davide; Accordi, Gianmarco; Fatica, Massimiliano; Beccari, Andrea R.; Palermo, Gianluca
Computer implemented method for determining an optimal positional matching of a binding molecule in a docking site of a target molecule
2023-01-01 Palermo, G.; Ottaviani, D.; Buonanni, D.; Beccari, A.; Triuzzi, E.; Mengoni, R.
EXSCALATE: An Extreme-Scale Virtual Screening Platform for Drug Discovery Targeting Polypharmacology to Fight SARS-CoV-2
2023-01-01 Gadioli, D.; Vitali, E.; Ficarelli, F.; Latini, C.; Manelfi, C.; Talarico, C.; Silvano, C.; Cavazzoni, C.; Palermo, G.; Beccari, A. R.
The Legio Fault Resilience Framework: Design and Rationale
2023-01-01 Rocco, Roberto; Palermo, Gianluca
Exploit Approximation to Support Fault Resiliency in MPI-based Applications
2023-01-01 Rocco, Roberto; Palermo, Gianluca
Fault-Aware Group-Collective Communication Creation and Repair in MPI
2023-01-01 Rocco, Roberto; Palermo, Gianluca
Fault Awareness in the MPI 4.0 Session Model
2023-01-01 Rocco, Roberto; Palermo, Gianluca; Gregori, Daniele
Domain-Specific Energy Modeling for Drug Discovery and Magnetohydrodynamics Applications
2023-01-01 Carpentieri, Lorenzo; D'Antonio, Marco; Fan, Kaijie; Crisci, Luigi; Cosenza, Biagio; Ficarelli, Federico; Cesarini, Daniele; Accordi, Gianmarco; Gadioli, Davide; Palermo, Gianluca; Thoman, Peter; Salzmann, Philip; Gschwandtner, Philipp; Wippler, Markus; Marchetti, Filippo; Gregori, Daniele; Beccari, Andrea Rosario
Tunable and Portable Extreme-Scale Drug Discovery Platform at Exascale: the LIGATE Approach
2023-01-01 Palermo, G.; Accordi, G.; Gadioli, D.; Vitali, E.; Silvano, C.; Guindani, B.; Ardagna, D.; Beccari, A. R.; Bonanni, D.; Talarico, C.; Lughini, F.; Martinovic, J.; Silva, P.; Bohm, A.; Beranek, J.; Krenek, J.; Jansik, B.; Cosenza, B.; Crisci, L.; Thoman, P.; Salzmann, P.; Fahringer, T.; Alexander, L. T.; Tauriello, G.; Schwede, T.; Durairaj, J.; Emerson, A.; Ficarelli, F.; Wingbermühle, S.; Lindhal, E.; Gregori, D.; Sana, E.; Coletti, S.; Gschwandtner, P.
MEDIATE - Molecular DockIng at homE: Turning collaborative simulations into therapeutic solutions
2023-01-01 Vistoli, Giulio; Manelfi, Candida; Talarico, Carmine; Fava, Anna; Warshel, Arieh; Tetko, Igor V; Apostolov, Rossen; Ye, Yang; Latini, Chiara; Ficarelli, Federico; Palermo, Gianluca; Gadioli, Davide; Vitali, Emanuele; Varriale, Gaetano; Pisapia, Vincenzo; Scaturro, Marco; Coletti, Silvano; Gregori, Daniele; Gruffat, Daniel; Leija, Edgardo; Hessenauer, Sam; Delbianco, Alberto; Allegretti, Marcello; Beccari, Andrea R
The mARGOt autotuning framework design and improvements
2022-01-01 Rocco, R.; Palermo, G.
Dynamically-Tunable Dataflow Architectures Based on Markov Queuing Models
2022-01-01 Tibaldi, M.; Palermo, G.; Pilato, C.
Quantum molecular unfolding
2022-01-01 Mato, Kevin; Mengoni, Riccardo; Ottaviani, Daniele; Palermo, Gianluca
An extreme-scale virtual screening platform for drug discovery
2022-01-01 Gadioli, Davide; Vitali, Emanuele; Ficarelli, Federico; Latini, Chiara; Manelfi, Candida; Talarico, Carmine; Silvano, Cristina; Beccari, Andrea. R.; Palermo, Gianluca
A Review on Parallel Virtual Screening Softwares for High-Performance Computers
2022-01-01 Murugan, Natarajan Arul; Podobas, Artur; Gadioli, Davide; Vitali, Emanuele; Palermo, Gianluca; Markidis, Stefano
Parametric Throughput Oriented Large Integer Multipliers for High Level Synthesis
2021-01-01 Vitali, E.; Gadioli, D.; Ferrandi, F.; Palermo, G.
Understanding the I/O Impact on the Performance of High-Throughput Molecular Docking
2021-01-01 Markidis, Stefano; Gadioli, Davide; Vitali, Emanuele; Palermo, Gianluca
Legio: fault resiliency for embarrassingly parallel MPI applications
2021-01-01 Rocco, Roberto; Gadioli, Davide; Palermo, Gianluca
Tunable approximations to control time-to-solution in an HPC molecular docking Mini-App
2021-01-01 Gadioli, D.; Palermo, G.; Cherubin, S.; Vitali, E.; Agosta, G.; Manelfi, C.; Beccari, A. R.; Cavazzoni, C.; Sanna, N.; Silvano, C.
EVEREST: A design environment for extreme-scale big data analytics on heterogeneous platforms
2021-01-01 Pilato, C.; Bohm, S.; Brocheton, F.; Castrillon, J.; Cevasco, R.; Cima, V.; Cmar, R.; Diamantopoulos, D.; Ferrandi, F.; Martinovic, J.; Palermo, G.; Paolino, M.; Parodi, A.; Pittaluga, L.; Raho, D.; Regazzoni, F.; Slaninova, K.; Hagleitner, C.
Performance-Driven Analysis for an Adaptive Car-Navigation Service on HPC Systems
2020-01-01 Arcari, Leonardo; Gribaudo, Marco; Palermo, Gianluca; Serazzi, Giuseppe
A Collaborative Filtering Approach for the Automatic Tuning of Compiler Optimisations
2020-01-01 Cereda, Stefano; Palermo, Gianluca; Cremonesi, Paolo; Doni, Stefano
Pegasus: Performance Engineering for Software Applications Targeting HPC Systems
2020-01-01 Pinto, P.; Bispo, J.; Cardoso, J.; Barbosa, J. G.; Gadioli, D.; Palermo, G.; Martinovic, J.; Golasowski, M.; Slaninova, K.; Cmar, R.; Silvano, C.
A survey on compiler autotuning using machine learning
2019-01-01 Ashouri, Amir H.; Killian, William; Cavazos, John; Palermo, Gianluca; Silvano, Cristina
An Efficient Monte Carlo-based Probabilistic Time-Dependent Routing Calculation Targeting a Server-Side Car Navigation System
2019-01-01 Vitali, E.; Gadioli, D.; Palermo, G.; Golasowski, M.; Bispo, J.; Pinto, P.; Martinovic, J.; Slaninova, K.; Cardoso, J.; Silvano, C.
The ANTAREX domain specific language for high performance computing
2019-01-01 Silvano, C.; Agosta, G.; Bartolini, A.; Beccari, A. R.; Benini, L.; Besnard, L.; Bispo, J.; Cmar, R.; Cardoso, J. M. P.; Cavazzoni, C.; Cesarini, D.; Cherubin, S.; Ficarelli, F.; Gadioli, D.; Golasowski, M.; Libri, A.; Martinovic, J.; Palermo, G.; Pinto, P.; Rohou, E.; Slaninova, K.; Vitali, E.
Workload- and process-variation aware voltage/frequency tuning for energy efficient performance sustainability of NTC manycores
2019-01-01 Stamelakos, I.; Xydis, S.; Palermo, G.; Silvano, C.
Exploiting OpenMP and OpenACC to accelerate a geometric approach to molecular docking in heterogeneous HPC nodes
2019-01-01 Vitali, E.; Gadioli, D.; Palermo, G.; Beccari, A.; Cavazzoni, C.; Silvano, C.
Supporting the Scale-up of High Performance Application to Pre-Exascale Systems: The ANTAREX Approach
2019-01-01 Silvano, C; Agosta, G; Bartolini, A; Beccari, Ar; Benini, L; Besnard, L; Bispo, J; Cmar, R; Cardoso, Jmp; Cavazzoni, C; Cesarini, D; Cherubin, S; Ficarelli, F; Gadioli, D; Golasowski, M; Lasri, I; Libri, A; Manelfi, C; Martinovic, J; Palermo, G; Pinto, P; Rohou, E; Sanna, N; Slaninova, K; Vitali, E
An Hybrid Approach to accelerate a Molecular Docking Application for Virtual Screening in Heterogeneous Nodes
2019-01-01 Vitali, E.; Gadioli, D.; Beccari, A.; Cavazzonio, C.; Silvano, C.; Palermo, G.
mARGOt: a Dynamic Autotuning Framework for Self-aware Approximate Computing
2019-01-01 Gadioli, Davide; Vitali, Emanuele; Palermo, Gianluca; Silvano, Cristina
Autotuning and adaptivity in energy efficient HPC systems: The ANTAREX toolbox
2018-01-01 Silvano, Cristina; Palermo, Gianluca; Agosta, Giovanni; Ashouri, Amir H.; Gadioli, Davide; Cherubin, Stefano; Vitali, Emanuele; Benini, Luca; Bartolini, Andrea; Cesarini, Daniele; Cardoso, Joao; Bispo, Joao; Pinto, Pedro; Nobre, Riccardo; Rohou, Erven; Besnard, Loïc; Lasri, Imane; Sanna, Nico; Cavazzoni, Carlo; Cmar, Radim; Martinovič, Jan; Slaninová, Kateřina; Golasowski, Martin; Beccari, Andrea R.; Manelfi, Candida
Accelerating a Geometric Approach to Molecular Docking with OpenACC
2018-01-01 Vitali, Emanuele; Gadioli, Davide; Palermo, Gianluca; Beccari, Andrea; Silvano, Cristina
Automatic Tuning of Compilers Using Machine Learning
2018-01-01 Ashouri, Amir H.; Palermo, Gianluca; Cavazos, John; Silvano, Cristina
Design space pruning and computational workload splitting for autotuning OpenCL applications
2018-01-01 Erdem, Ahmet; Gadioli, Davide; Palermo, Gianluca; Silvano, Cristina
SOCRATES - A seamless online compiler and system runtime autotuning framework for energy-aware applications
2018-01-01 Gadioli, Davide; Nobre, Ricardo; Pinto, Pedro; Vitali, Emanuele; Ashouri, Amir H.; Palermo, Gianluca; Cardoso, Joao; Silvano, Cristina
Guest Editorial: Special Issue on Computing Frontiers
2018-01-01 Tumeo, Antonino; Franke, Hubertus; Palermo, Gianluca; Feo, John
ANTAREX: A DSL-based Approach to Adaptively Optimizing and Enforcing Extra-Functional Properties in High Performance Computing
2018-01-01 Silvano, C; Agosta, G; Bartolini, A; Beccari, Ar; Benini, L; Besnard, L; Bispo, J; Cmar, R; Cardoso, Jmp; Cavazzoni, C; Cherubin, S; Gadioli, D; Golasowski, M; Lasri, I; Martinovic, J; Palermo, G; Pinto, P; Rohou, E; Sanna, N; Slaninova, K; Vitali, E
MiCOMP: Mitigating the Compiler Phase-Ordering Problem Using Optimization Sub-Sequences and Machine Learning
2017-01-01 Ashouri, AMIR HOSSEIN; Bignoli, Andrea; Palermo, Gianluca; Silvano, Cristina; Kulkarni, Sameer; Cavazos, John
Early stage interference checking for automatic design space exploration of mixed critical systems
2017-01-01 Vitali, Emanuele; Palermo, Gianluca
CONTREX: Design of embedded mixed-criticality CONTRol systems under consideration of EXtra-functional properties
2017-01-01 Grüttner, Kim; Görgen, Ralph; Schreiner, Sören; Herrera, Fernando; Peñil, Pablo; Medina, Julio; Villar, Eugenio; Palermo, Gianluca; Fornaciari, William; Brandolese, Carlo; Gadioli, Davide; Vitali, Emanuele; Zoni, Davide; Bocchio, Sara; Ceva, Luca; Azzoni, Paolo; Poncino, Massimo; Vinco, Sara; Macii, Enrico; Cusenza, Salvatore; Favaro, John; Valencia, Raúl; Sander, Ingo; Rosvall, Kathrin; Khalilzad, Nima; Quaglia, Davide
The ANTAREX tool flow for monitoring and autotuning energy efficient HPC systems
2017-01-01 Silvano, Cristina; Agosta, Giovanni; Barbosa, Jorge; Bartolini, Andrea; Beccari, Andrea R.; Benini, Luca; Bispo, Joao; Cardoso, João M. P.; Cavazzoni, Carlo; Cherubin, Stefano; Cmar, Radim; Gadioli, Davide; Manelfi, Candida; Martinovič, Jan; Nobre, Ricardo; Palermo, Gianluca; Palkovič, Martin; Pinto, Pedro; Rohou, Erven; Sanna, Nico; Slaninová, Kateřina
Exploring efficient hardware support for applications with irregular memory patterns on multinode manycore architectures
2017-01-01 Ceriani, Marco; Secchi, Simone; Villa, Oreste; Tumeo, Antonino; Palermo, Gianluca
Throughput balancing for energy efficient near-threshold manycores
2016-01-01 Stamelakos, Ioannis; Xydis, Sotirios; Palermo, Gianluca; Silvano, Cristina
Predictive modeling methodology for compiler phase-ordering
2016-01-01 Ashouri, AMIR HOSSEIN; Bignoli, Andrea; Palermo, Gianluca; Silvano, Cristina
COBAYN: Compiler autotuning framework using Bayesian networks
2016-01-01 Ashouri, AMIR HOSSEIN; Mariani, Giovanni; Palermo, Gianluca; Park, Eunjung; Cavazos, John; Silvano, Cristina
Real-time considerations for rugged embedded systems
2016-01-01 Tumeo, Antonino; Ceriani, M.; Palermo, Gianluca; Minutoli, Marco; Castellana, VITO GIOVANNI; Ferrandi, Fabrizio
Autotuning and adaptivity approach for energy efficient Exascale HPC systems: The ANTAREX approach
2016-01-01 Silvano, Cristina; Agosta, Giovanni; Bartolini, Andrea; Beccari, Andrea R.; Benini, Luca; Bispo, João; Cmar, Radim; Cardoso, João M. P.; Cavazzoni, Carlo; Martinovič, Jan; Palermo, Gianluca; Palkovič, Martin; Pinto, Pedro; Rohou, Erven; Sanna, Nico; Slaninová, Kateřina
DSL and Autotuning Tools for Code Optimisation on HPC Inspired by Navigation Use Case
2016-01-01 Martinovic, Jan; Slaninova, Katerina; Golasowski, Martin; Cmar, Radim; Cardoso, Joao M. P.; Bispo, Joao; Palermo, Gianluca; Gadioli, Davide; Silvano, Cristina
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