Sfoglia per Autore
Biological and Medical Ontologies: Disease Ontology (DO)
2024-01-01 Al Khalaf, Ruba; Bernasconi, Anna; Masseroli, Marco
Use of longitudinal data in genomic management of dairy cattle herds
2023-01-01 Bagnato, A.; Punturiero, C.; Bernini, F.; Strillacci, M. G.; Milanesi, R.; Masseroli, M.; Vergani, A. M.
RAAVioli: a bioinformatic tool for the characterization of AAV integration and recombination processes
2023-01-01 Cipriani, C; Spinozzi, G; Rudilosso, L; Dalvadi, D; Grompe, M; Masseroli, M; Montini, E; Calabria, A; Cesana, D
The use of machine learning in the genomic era of livestock farming
2023-01-01 Vergani, A. M.; Bagnato, A.; Masseroli, M.
Multi-label transcriptional classification of colorectal cancer reflects tumour cell population heterogeneity
2023-01-01 Cascianelli, S; Barbera, C; Ulla, Aa; Grassi, E; Lupo, B; Pasini, D; Bertotti, A; Trusolino, L; Medico, E; Isella, C; Masseroli, M.
Multi-label transcriptional classification of colorectal cancer reflects tumour cell population heterogeneity
2023-01-01 Cascianelli, S; Barbera, C; Ulla, Aa; Grassi, E; Lupo, B; Pasini, D; Bertotti, A; Trusolino, L; Medico, E; Isella, C; Masseroli, M
Unraveling the effect of proliferative stress in vivo in hematopoietic stem cell gene therapy
2023-01-01 Gazzo, F; Cesana, D; Gallina, P; Rudilosso, L; Spinozzi, G; Pais, G; Montini, E; Masseroli, M; Calabria, A.
Machine learning for multi-label subtyping: a key to dissecting intra-tumor heterogeneity at the bulk sample level
2023-01-01 Cascianelli, Silvia; Masseroli, Marco
Gene co-expression network analysis for identifying cell populations in RNA-seq patient-derived xenografts
2023-01-01 Tome', Simone; Cascianelli, Silvia; Medico, Enzo; Isella, Claudio; Masseroli, Marco.
Identification of transcription factor high accumulation DNA zones
2023-01-01 Cascianelli, S.; Ceddia, G.; Marchesi, A.; Masseroli, M.
Biologically-driven feature selection for improved functional interpretability of gene expression data analysis
2023-01-01 Mongardi, S.; Cascianelli, S.; Masseroli, M.
Adapting feature selection in gene expression-based classification for higher biological interpretability
2023-01-01 Mongardi, S.; Cascianelli, S.; Masseroli, M.
Transcriptional analysis of the synergistic mechanism of action of simvastatin and valproic acid with chemotherapy in metastatic pancreatic adenocarcinoma.
2023-01-01 Fiorenza, L; Fratelli, M; Roca, S; Iannelli, F; Migliorino, R; Leone, A; Di Gennaro, E; Lanza, Vf; García Bermejo, M-L; Budillon, A; Masseroli, M.
Non-negative Matrix Tri-Factorization for data integration and knowledge inference on breast cancer subtyping
2023-01-01 Riccio Rengifo, Camila; Cascianelli, Silvia; Ceddia, Gaia; Masseroli, Marco
The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles
2023-01-01 Schreiber, J.; Boix, C.; Wooklee, J.; Li, H.; Guan, Y.; Chang, C. -C.; Chang, J. -C.; Hawkins-Hooker, A.; Scholkopf, B.; Schweikert, G.; Carulla, M. R.; Canakoglu, A.; Guzzo, F.; Nanni, L.; Masseroli, M.; Carman, M. J.; Pinoli, P.; Hong, C.; Yip, K. Y.; Spence, J. P.; Batra, S. S.; Song, Y. S.; Mahony, S.; Zhang, Z.; Tan, W.; Shen, Y.; Sun, Y.; Shi, M.; Adrian, J.; Sandstrom, R.; Farrell, N.; Halow, J.; Lee, K.; Jiang, L.; Yang, X.; Epstein, C.; Strattan, J. S.; Bernstein, B.; Snyder, M.; Kellis, M.; Stafford, W.; Kundaje, A.
Supervised Relevance-Redundancy assessments for feature selection in omics-based classification scenarios
2023-01-01 Cascianelli, Silvia; Galzerano, Arianna; Masseroli, Marco
Multi-label transcriptional classification of colorectal cancer reflects tumor cell population heterogeneity
2023-01-01 Cascianelli, Silvia; Barbera, Chiara; Ambra Ulla, Alexandra; Grassi, Elena; Lupo, Barbara; Pasini, Diego; Bertotti, Andrea; Trusolino, Livio; Medico, Enzo; Isella &, Claudio; Masseroli, Marco
Gene expression-based multi-label classification to face colorectal cancer heterogeneity and provide biologically and clinically relevant traits
2022-01-01 Barbera, C; Cascianelli, S; Ulla, Aa; Grassi, E; Lupo, B; Pasini, D; Bertotti, A; Trusolino, L; Medico, E; Isella, C; Masseroli, M
Statistical and machine learning methods to investigate mutations in RAS-mutated colorectal cancer patients
2022-01-01 Bellomo, M; Cascianelli, S; Medico, E; Masseroli, M
An integrated, scalable framework for identification and quantification of tandem duplications in DNA sequencing data
2022-01-01 Sergi, A; Mannarino, L; Beltrame, L; Marchini, S; Masseroli, M.
Machine learning to discover genes predictive of RAS-mutated cases in mutational profiles of colorectal cancer patients.
2022-01-01 Bellomo, M; Cascianelli, S; Medico, E; Masseroli, M.
Accurate and highly interpretable prediction of gene expression from histone modifications
2022-01-01 Frasca, Fabrizio; Matteucci, Matteo; Leone, Michele; Morelli, Marco J; Masseroli, Marco
Genomic data integration and user-defined sample-set extraction for population variant analysis
2022-01-01 Alfonsi, Tommaso; Bernasconi, Anna; Canakoglu, Arif; Masseroli, Marco
RGMQL: scalable and interoperable computing of heterogeneous omics big data and metadata in R/Bioconductor
2022-01-01 Pallotta, Simone; Cascianelli, Silvia; Masseroli, Marco
Predicting Drug Synergism by Means of Non-Negative Matrix Tri-Factorization
2022-01-01 Pinoli, P.; Ceddia, G.; Ceri, S.; Masseroli, M.
Investigating Deep Learning based Breast Cancer Subtyping using Pan-cancer and Multi-omic Data
2022-01-01 Cristovao, F.; Cascianelli, S.; Canakoglu, A.; Carman, M.; Nanni, L.; Pinoli, P.; Masseroli, M.
Identification, semantic annotation and comparison of combinations of functional elements in multiple biological conditions
2022-01-01 Leone, M.; Galeota, E.; Masseroli, M.; Pelizzola, M.
META-BASE: a Novel Architecture for Large-Scale Genomic Metadata Integration
2022-01-01 Bernasconi, Anna; Canakoglu, Arif; Masseroli, Marco; Ceri, Stefano
Investigating transcript isoform RNA-seq data and machine learning techniques for breast cancer subtyping
2021-01-01 Cascianelli, S; Sanatdoost, Sn; Masseroli, M.
A novel computational framework for the identification of the TD-plus phenotype in high grade serous ovarian cancer
2021-01-01 Sergi, A; Beltrame, L; Paracchini, L; Venturini, L; D’Incalci, M; Marchini, S; Masseroli, M
Supervised machine learning for the assessment of Chronic Kidney Disease advancement
2021-01-01 Ventrella, P.; Delgrossi, G.; Ferrario, G.; Righetti, M.; Masseroli, M.
Gene function finding through cross-organism ensemble learning
2021-01-01 Moro, G.; Masseroli, M.
Computational analysis of fused co-expression networks for the identification of candidate cancer gene biomarkers
2021-01-01 Pidò, Sara; Ceddia, Gaia; Masseroli, Marco
The road towards data integration in human genomics: players, steps and interactions
2021-01-01 Bernasconi, Anna; Canakoglu, Arif; Masseroli, Marco; Ceri, Stefano
Predictive modeling of gene expression regulation
2021-01-01 Regondi, C.; Fratelli, M.; Damia, G.; Guffanti, F.; Ganzinelli, M.; Matteucci, M.; Masseroli, M.
A review on viral data sources and search systems for perspective mitigation of COVID-19
2021-01-01 Bernasconi, Anna; Canakoglu, Arif; Masseroli, Marco; Pinoli, Pietro; Ceri, Stefano
Federated sharing and processing of genomic datasets for tertiary data analysis
2021-01-01 Canakoglu, A.; Pinoli, P.; Gulino, A.; Nanni, L.; Masseroli, M.; Ceri, S.
Boosting perspectives for breast cancer intrinsic subtyping on RNA-sequencing data
2020-01-01 Cascianelli, S; Molineris, I; Isella, C; Masseroli, M; Medico, E
OpenGDC: Unifying, Modeling, Integrating Cancer Genomic Data and Clinical Metadata
2020-01-01 Cappelli, Eleonora; Cumbo, Fabio; Bernasconi, Anna; Canakoglu, Arif; Ceri, Stefano; Masseroli, Marco; Weitschek, Emanuel
Hybrid evolutionary framework for selection of genes predicting breast cancer relapse
2020-01-01 Perino, L; Cascianelli, S; Masseroli, M
SMfinder: Small molecules finder for metabolomics and lipidomics analysis
2020-01-01 Martano, G.; Leone, M.; D'Oro, P.; Matafora, V.; Cattaneo, A.; Masseroli, M.; Bachi, A.
Matrix Factorization-based Technique for Drug Repurposing Predictions
2020-01-01 Ceddia, Gaia; Pinoli, Pietro; Ceri, Stefano; Masseroli, Marco
Evaluating Deep Semi-supervised Learning for Whole-Transcriptome Breast Cancer Subtyping
2020-01-01 Cascianelli, Silvia; Cristovao, Francisco; Canakoglu, Arif; Carman, Mark; Nanni, Luca; Pinoli, Pietro; Masseroli, Marco
Network modeling and analysis of normal and cancer gene expression data
2020-01-01 Ceddia, G.; Pido', Sara; Masseroli, M.
Machine learning for RNA sequencing-based intrinsic subtyping of breast cancer
2020-01-01 Cascianelli, S.; Molineris, I.; Isella, C.; Masseroli, M.; Medico, E.
Association rule mining to identify transcription factor interactions in genomic regions
2020-01-01 Ceddia, Gaia; Martino, Liuba Nausicaa; Parodi, Alice; Secchi, Piercesare; Campaner, Stefano; Masseroli, Marco
Exposing and characterizing subpopulations of distinctly regulated genes by k-plane regression
2020-01-01 Frasca, F.; Matteucci, M; Morelli, Mj; Masseroli, M
Search and comparison of (epi)genomic feature patterns in multiple genome browser tracks
2020-01-01 Ceol, A.; Montanari, P.; Bartolini, I.; Ceri, S.; Ciaccia, P.; Patella, M.; Masseroli, M.
Genomic big data management, modeling and computing
2019-01-01 Masseroli, M; Pinoli, P; Canakoglu, A; Bernasconi, A; Gulino, A; Nanni, L; Orlova, O; Pallotta, S; Ceri, S
Computational analysis and comparison of gene networks from TCGA normal and cancer data
2019-01-01 Ceddia, G.; Pido', Sara; Masseroli, M.
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