Sfoglia per Autore
Adapting feature selection in gene expression-based classification for higher biological interpretability
2023-01-01 Mongardi, S.; Cascianelli, S.; Masseroli, M.
Gene co-expression network analysis for identifying cell populations in RNA-seq patient-derived xenografts
2023-01-01 Tome', Simone; Cascianelli, Silvia; Medico, Enzo; Isella, Claudio; Masseroli, Marco.
Machine learning for multi-label subtyping: a key to dissecting intra-tumor heterogeneity at the bulk sample level
2023-01-01 Cascianelli, Silvia; Masseroli, Marco
Biologically-driven feature selection for improved functional interpretability of gene expression data analysis
2023-01-01 Mongardi, S.; Cascianelli, S.; Masseroli, M.
Non-negative Matrix Tri-Factorization for data integration and knowledge inference on breast cancer subtyping
2023-01-01 Riccio Rengifo, Camila; Cascianelli, Silvia; Ceddia, Gaia; Masseroli, Marco
Multi-label transcriptional classification of colorectal cancer reflects tumor cell population heterogeneity
2023-01-01 Cascianelli, Silvia; Barbera, Chiara; Ambra Ulla, Alexandra; Grassi, Elena; Lupo, Barbara; Pasini, Diego; Bertotti, Andrea; Trusolino, Livio; Medico, Enzo; Isella &, Claudio; Masseroli, Marco
Supervised Relevance-Redundancy assessments for feature selection in omics-based classification scenarios
2023-01-01 Cascianelli, Silvia; Galzerano, Arianna; Masseroli, Marco
RGMQL: scalable and interoperable computing of heterogeneous omics big data and metadata in R/Bioconductor
2022-01-01 Pallotta, Simone; Cascianelli, Silvia; Masseroli, Marco
Gene expression-based multi-label classification to face colorectal cancer heterogeneity and provide biologically and clinically relevant traits
2022-01-01 Barbera, C; Cascianelli, S; Ulla, Aa; Grassi, E; Lupo, B; Pasini, D; Bertotti, A; Trusolino, L; Medico, E; Isella, C; Masseroli, M
Accurate and highly interpretable prediction of gene expression from histone modifications
2022-01-01 Frasca, Fabrizio; Matteucci, Matteo; Leone, Michele; Morelli, Marco J; Masseroli, Marco
Predicting Drug Synergism by Means of Non-Negative Matrix Tri-Factorization
2022-01-01 Pinoli, P.; Ceddia, G.; Ceri, S.; Masseroli, M.
Genomic data integration and user-defined sample-set extraction for population variant analysis
2022-01-01 Alfonsi, Tommaso; Bernasconi, Anna; Canakoglu, Arif; Masseroli, Marco
Identification, semantic annotation and comparison of combinations of functional elements in multiple biological conditions
2022-01-01 Leone, M.; Galeota, E.; Masseroli, M.; Pelizzola, M.
Statistical and machine learning methods to investigate mutations in RAS-mutated colorectal cancer patients
2022-01-01 Bellomo, M; Cascianelli, S; Medico, E; Masseroli, M
An integrated, scalable framework for identification and quantification of tandem duplications in DNA sequencing data
2022-01-01 Sergi, A; Mannarino, L; Beltrame, L; Marchini, S; Masseroli, M.
Machine learning to discover genes predictive of RAS-mutated cases in mutational profiles of colorectal cancer patients.
2022-01-01 Bellomo, M; Cascianelli, S; Medico, E; Masseroli, M.
META-BASE: a Novel Architecture for Large-Scale Genomic Metadata Integration
2022-01-01 Bernasconi, Anna; Canakoglu, Arif; Masseroli, Marco; Ceri, Stefano
Investigating Deep Learning based Breast Cancer Subtyping using Pan-cancer and Multi-omic Data
2022-01-01 Cristovao, F.; Cascianelli, S.; Canakoglu, A.; Carman, M.; Nanni, L.; Pinoli, P.; Masseroli, M.
Gene function finding through cross-organism ensemble learning
2021-01-01 Moro, G.; Masseroli, M.
Supervised machine learning for the assessment of Chronic Kidney Disease advancement
2021-01-01 Ventrella, P.; Delgrossi, G.; Ferrario, G.; Righetti, M.; Masseroli, M.
Investigating transcript isoform RNA-seq data and machine learning techniques for breast cancer subtyping
2021-01-01 Cascianelli, S; Sanatdoost, Sn; Masseroli, M.
A novel computational framework for the identification of the TD-plus phenotype in high grade serous ovarian cancer
2021-01-01 Sergi, A; Beltrame, L; Paracchini, L; Venturini, L; D’Incalci, M; Marchini, S; Masseroli, M
Predictive modeling of gene expression regulation
2021-01-01 Regondi, C.; Fratelli, M.; Damia, G.; Guffanti, F.; Ganzinelli, M.; Matteucci, M.; Masseroli, M.
The road towards data integration in human genomics: players, steps and interactions
2021-01-01 Bernasconi, Anna; Canakoglu, Arif; Masseroli, Marco; Ceri, Stefano
Federated sharing and processing of genomic datasets for tertiary data analysis
2021-01-01 Canakoglu, A.; Pinoli, P.; Gulino, A.; Nanni, L.; Masseroli, M.; Ceri, S.
Computational analysis of fused co-expression networks for the identification of candidate cancer gene biomarkers
2021-01-01 Pidò, Sara; Ceddia, Gaia; Masseroli, Marco
A review on viral data sources and search systems for perspective mitigation of COVID-19
2021-01-01 Bernasconi, Anna; Canakoglu, Arif; Masseroli, Marco; Pinoli, Pietro; Ceri, Stefano
Boosting perspectives for breast cancer intrinsic subtyping on RNA-sequencing data
2020-01-01 Cascianelli, S; Molineris, I; Isella, C; Masseroli, M; Medico, E
Evaluating Deep Semi-supervised Learning for Whole-Transcriptome Breast Cancer Subtyping
2020-01-01 Cascianelli, Silvia; Cristovao, Francisco; Canakoglu, Arif; Carman, Mark; Nanni, Luca; Pinoli, Pietro; Masseroli, Marco
OpenGDC: Unifying, Modeling, Integrating Cancer Genomic Data and Clinical Metadata
2020-01-01 Cappelli, Eleonora; Cumbo, Fabio; Bernasconi, Anna; Canakoglu, Arif; Ceri, Stefano; Masseroli, Marco; Weitschek, Emanuel
Network modeling and analysis of normal and cancer gene expression data
2020-01-01 Ceddia, G.; Pido', Sara; Masseroli, M.
Search and comparison of (epi)genomic feature patterns in multiple genome browser tracks
2020-01-01 Ceol, A.; Montanari, P.; Bartolini, I.; Ceri, S.; Ciaccia, P.; Patella, M.; Masseroli, M.
Exposing and characterizing subpopulations of distinctly regulated genes by k-plane regression
2020-01-01 Frasca, F.; Matteucci, M; Morelli, Mj; Masseroli, M
Matrix Factorization-based Technique for Drug Repurposing Predictions
2020-01-01 Ceddia, Gaia; Pinoli, Pietro; Ceri, Stefano; Masseroli, Marco
Hybrid evolutionary framework for selection of genes predicting breast cancer relapse
2020-01-01 Perino, L; Cascianelli, S; Masseroli, M
SMfinder: Small molecules finder for metabolomics and lipidomics analysis
2020-01-01 Martano, G.; Leone, M.; D'Oro, P.; Matafora, V.; Cattaneo, A.; Masseroli, M.; Bachi, A.
Association rule mining to identify transcription factor interactions in genomic regions
2020-01-01 Ceddia, Gaia; Martino, Liuba Nausicaa; Parodi, Alice; Secchi, Piercesare; Campaner, Stefano; Masseroli, Marco
Machine learning for RNA sequencing-based intrinsic subtyping of breast cancer
2020-01-01 Cascianelli, S.; Molineris, I.; Isella, C.; Masseroli, M.; Medico, E.
Biological and Medical Ontologies: Disease Ontology (DO)
2019-01-01 Bernasconi, A.; Masseroli, M.
Computational analysis and comparison of gene networks from TCGA normal and cancer data
2019-01-01 Ceddia, G.; Pido', Sara; Masseroli, M.
Biological and Medical Ontologies: Systems Biology Ontology (SBO)
2019-01-01 Bernasconi, A.; Masseroli, M.
Biological and Medical Ontologies: PRotein Ontology (PRO)
2019-01-01 Chicco, D.; Masseroli, M.
Genomic big data management, modeling and computing
2019-01-01 Masseroli, M; Pinoli, P; Canakoglu, A; Bernasconi, A; Gulino, A; Nanni, L; Orlova, O; Pallotta, S; Ceri, S
Analysis of Gene Regulatory Networks Inferred from ChIP-seq Data
2019-01-01 Stamoulakatou, E.; Piccardi, C.; Masseroli, M.
Using GMQL-web for querying, downloading and integrating public with private genomic datasets
2019-01-01 Settino, M.; Bernasconi, A.; Ceddia, G.; Agapito, G.; Masseroli, M.; Cannataro, M.
Comparing classic, deep and semi-supervised learning for whole-transcriptome breast cancer subtyping
2019-01-01 Cristovao, F; Canakoglu, A; Carman, M; Cascianelli, S; Nanni, L; Pinoli, P; Masseroli, M
Network-based approach to identify new indications for existing drugs in the DrugBank database
2019-01-01 Ceddia, G; Pinoli, P; Masseroli, M
Biological and Medical Ontologies: Introduction
2019-01-01 Masseroli, M
Biological and Medical Ontologies: Integrative Bioinformatics
2019-01-01 Masseroli, M
De novo sequence-based method for ncRPI prediction using structural information
2019-01-01 Leone, M; Galvani, M; Masseroli, M
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